Glyma18g48900 - SoyBase

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Report for Sequence Feature Glyma18g48900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58320459
stop:	58323546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08850	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat receptor-like protein kinase family protein \| chr4:5636693-5640496 REVERSE LENGTH=1045	SoyBase	E_val: 4.00E-165	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF472	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7KZX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase-like protein n=1 Tax=Medicago truncatula RepID=G7KZX4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N490	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N490_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g254000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48900

Limit To All Plant Sequences

>Glyma18g48900.1   sequence type=CDS   gene model=Glyma18g48900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTTTTGTTATTTGCAGTGTGGTTATTATGGGGATAACATTGGAGTTAGAAGCCGTGCCTACACCGTCGCAGCTTCAATTGGAAGAAAATGCTATAATCAATAGTGGATGGTGGAATAGATCAGAGTCAGTAGCTTCGCGCAATATCTGTTCATGGTATGGTATGTCTTGCAACGTCGCAGGAAGCGTAACTAGAATCAACTATGGCTTTTATACACCTGGGATTCGATTAGCAACACTAAACCTCTCTGCTTTCAAGAATTTAGAATGGCTTGAGGTCTCAAACTGTGGACTACAAGGGACTATCCCATCTGATATTGGTAATCTCCCTAAACTCACTCATCTTGATTTGTCCCATAATTCTCTTTATGGAGAAATACCTCCTTCATTGGCAAATCTTACCCAATTAGAGTTCTTAATCATCTCTCACAACAACATTCAAGGCTCAATTCCTGAGTTGTTGTTTCTAAAAAATCTCACTATCTTAGATTTGTCCGATAATTCACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACCCAATTAGAGAGCCTAATCATATCTGACAACAACATTCAAGGCTCAATTCCTGAGTTGTTATTTCTAAAAAATCTCACTGTCTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACGCAATTACAAAGACTAATTATCTCTTACAACAACATTCAAGGCCCCATTCCTGGTGAGTTGTGGTTTCTAAAAAATCTTACTGTCTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCAGCACTGACAAATCTTACCCAATTAGAGAACCTAATCATATCTCACAACAACATTCAAGGTTCAATTCCGCAGAATTTGGTTTTCTTGAAAAGTCTTACTTTGTTAGATCTATCAGCCAACAAAATCAGTGGGACCTTGCCCTTGTCACAGACAAATTTCCCACGTTTAATATTCCTTGACATTTCCGACAATCTACTTTCTGGTTCCTTAAAACCCTTGTCAGTAGGAAACCATGCACAGCTAACTAGTATTTACCTCAGAAACAACTCAATTAGTGGAAAAATTCCACCAGAGCTTGGATATTTGCCTTTCTTAACTACTCTGGATCTAAGCTACAATAATCTTACCGGAACAGTTCCTCTATCTATGCAAAATGTCTTTAACTTGAGGCTTTCATTCAACAATTTGAAGGGTCCCATTCCATATGGTTTCAGTGGGAGTGAGCTAATAGGGAACAAGGGTGTATGTAGCGATGATTTCTATTACATAGCTACACATCAATTCAAGCGTTGTTCAGCCCAAGACAACTTAGTAGTCATGGCCGGCAGCAACAAAGTAAGGCACAAGCACAATCAGCTGGTCATAGTTCTCCCTATCCTCATTTTTCTAATCATGCTCTTCTTACTATTCGTGTGTCTGAGGCACAATCGCATTGCAACTAAGAACAAACATGCAAACACAACAGCAGCCACTAAGAATGGGGACTTGTTCTGTATATGGAATTATGATGGAAGCATAGCCTATGAAGACATCATTACAGCAACCGAAGACTTTGACATGAGATATTGTATTGGAACAGGTGCCTATGGGAGCGTTTATAGGGCACAGTTACCAAGTGGCAAGATTGTTGCCGTGAAAAAACTCCACGGATTTGAAGCAGAGGTGGCAGCTTTTGATGAGAGTTTCAGAAATGAGGTCAAAGTATTATCAGAAATAAAGCATCGACATGTTGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATATATGAGTACATGGAGAGAGGCAGCTTGTTTTCAGTGTTGTTTGATGATGTGGAAGCCATGGAATTGGATTGGAAAAAGAGGGTTAGCATTGTGAAAGGCACTGCACATGCTCTGTCCTATCTTCATCATGACTTCACTCCTCCAATTGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTCAGACTGGGAGCCCAGTGTTTCAGACTTTGGCACAGCCCGATTCCTTAGCATTGATTCATCCTATCGAACTATAGTTGCCGGAACCATTGGGTACATAGCCCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAGGTGTGATGTGTACAGCTTTGGAGTGGTGGCACTCGAAACTTTGGTGGGATCGCATCCTAAGGAAATACTCTCATCACTTCAATCAGCATCTACTGAGAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGGCAACAATGTCAGTTTTAATGGAAATAGTTAGTGTTGCCATAGTTGCATTTGCGTGCTTAAATGCCAATCCTTGCTCTCGCCCAACAATGAAATCGGTCTCTCAATGTTTTCTTACTCAGCTTACACCATTAGACATTCCTTTGCGTGAGATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCATTATTTAAATTTGTGA

Predicted protein sequences of Glyma18g48900

Limit To All Plant Sequences

>Glyma18g48900.1   sequence type=predicted peptide   gene model=Glyma18g48900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFFVICSVVIMGITLELEAVPTPSQLQLEENAIINSGWWNRSESVASRNICSWYGMSCNVAGSVTRINYGFYTPGIRLATLNLSAFKNLEWLEVSNCGLQGTIPSDIGNLPKLTHLDLSHNSLYGEIPPSLANLTQLEFLIISHNNIQGSIPELLFLKNLTILDLSDNSLDGEIPPALANLTQLESLIISDNNIQGSIPELLFLKNLTVLDLSYNSLDGEIPPALANLTQLQRLIISYNNIQGPIPGELWFLKNLTVLDLSYNSLDGEIPPALTNLTQLENLIISHNNIQGSIPQNLVFLKSLTLLDLSANKISGTLPLSQTNFPRLIFLDISDNLLSGSLKPLSVGNHAQLTSIYLRNNSISGKIPPELGYLPFLTTLDLSYNNLTGTVPLSMQNVFNLRLSFNNLKGPIPYGFSGSELIGNKGVCSDDFYYIATHQFKRCSAQDNLVVMAGSNKVRHKHNQLVIVLPILIFLIMLFLLFVCLRHNRIATKNKHANTTAATKNGDLFCIWNYDGSIAYEDIITATEDFDMRYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVAAFDESFRNEVKVLSEIKHRHVVKLHGFCLHRRIMFLIYEYMERGSLFSVLFDDVEAMELDWKKRVSIVKGTAHALSYLHHDFTPPIVHRDISASNVLLNSDWEPSVSDFGTARFLSIDSSYRTIVAGTIGYIAPELAYSMVVSERCDVYSFGVVALETLVGSHPKEILSSLQSASTENGITLCEILDQRLPQATMSVLMEIVSVAIVAFACLNANPCSRPTMKSVSQCFLTQLTPLDIPLREISLQQLMSQELRHYLNL*

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